100 percent boost in tomato yields with new genetic toolkit


Tomatoes are some of the most genetically modified foods in history. What were tiny, strangely-shaped fruits the size of a human thumb are now magnificent, round and vibrant with flavor.

Crop yields of tomato plants could be boosted by 100 percent and plant breeders will be able to combine different gene variants among the set to create an optimal plant architecture for particular varieties and growing conditions. The set of mutations will enable farmers to maximize yield in tomatoes and potentially many other flowering plants, including staple crops like soybeans.

Natural variation in plant genes stopped being the best way to increase yield a while ago and yield gains are plateauing. That means a modern scientific approach is needed. Worldwide, more than 842 million people do not receive adequate nourishment, about 1 person in 8 alive today. The cost of food is expected to increase and hunger is likely to become more widespread as the global population expands to beyond 9 billion by 2050 unless improvements are made in the agriculture of developing nations.

Ancient humans recognized that selecting plants with modified architectures could have a major impact on the amount of fruit they produce. In general scientific terms, Cold Spring Harbor Laboratory Associate Professor Zachary Lippman explains, “Plant architecture results from a delicate balance between vegetative growth – shoots and leaves – and flower production. To increase crop yields, we want plants to produce as many flowers and fruits as possible, but this requires energy – energy that is produced in leaves.”

A set of genetic variants can dramatically increase tomato production. On the far left is the average yield from a plant that grows standard canning tomatoes. The next three piles were produced by plants with mutations found in the toolkit. The combination of genetic mutations on the far right produces twice as many tomatoes as the standard variety. Credit: Zachary Lippman/ Cold Spring Harbor Laboratory

In tomatoes and all other flowering plants, the balance between vegetative growth and flowers is controlled by a pair of opposing hormones, called florigen and anti-florigen. Prior work by Lippman and Israeli colleagues showed that a mutation in florigen can shift the balance between vegetative growth and flowering, modifying plant architecture in a way that increases yield. This suggested that the balance between florigen and anti-florigen might not yet be optimal in tomato plants, despite centuries of breeding with natural variants.

In a study published today in Nature Genetics, Lippman and colleagues identified an array of new gene mutations that allow, for the first time, a way to fine-tune the balance of florigen to anti-florigen. This maximizes fruit production without compromising the energy from leaves needed to support those fruits.

“We mixed and matched all of the mutations,” explains Lippman. “And we were able to produce plants with a broad range of architectures. Together, our collection of mutations forms a powerful toolkit for breeders to pinpoint a new optimum in flowering and architecture that can achieve previously unattainable yield gains.”

With multiple genetic variants, breeders can combine different mutations to provide a new optimum for their particular variety (as shown above) and growing conditions. Credit: Zachary Lippman/ Cold Spring Harbor Laboratory

The breakthrough benefit of the toolkit, says Lippman, is that it allows farmers to customize genetic variations for particular varieties and growing conditions. “For example, we found that different combinations boost yields for cherry tomatoes and other fresh-market tomatoes compared to tomatoes that are processed for sauce, ketchup, and other canned products. We’ve tested this in multiple genetic backgrounds, in multiple years, and in multiple environments – and the toolkit always provides a new maximum yield.”

These results are likely to be broadly applicable to other flowering crops, Lippman says. Mutations that affect florigen and anti-florigen are already known to play a role in controlling plant architecture for the oil crops rapeseed and sunflower, and can be applied in those. But the team is anxious to move on to critical food crops, specifically soybeans, which share many growth similarities with tomato.

  • Daniel Norero

    I don’t see the yield percentages of crosses in this publication; in the study of the same researcher, but in 2010, they had achieved a higher yield of 60% crossing M82 x sft4537 [http://www.nature.com/ng/journal/v42/n5/full/ng.550.html]